PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G19510.1
Common NameATRL5, F18O14.26, RL5, RMS4, RSM4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 100aa    MW: 11445 Da    PI: 8.9282
Description RAD-like 5
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G19510.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-071154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W  +a+ +g  ++++++k ++
      AT1G19510.1 11 SWTSKQNKMFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKRHY 54
                     7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.26458IPR017877Myb-like domain
SMARTSM007173.2E-6860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-41161IPR009057Homeodomain-like
SuperFamilySSF466892.77E-121164IPR009057Homeodomain-like
CDDcd001671.66E-41854No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009047anatomystem
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSSMSSSS SWTSKQNKMF ERALAVYDKD TPDRWQNVAK AVGSKSAEEV KRHYDILVED  60
LMNIEQDLVP LPKYKTVDVG SKSRGIDDFD LRLMKNMRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-303100293RADIALIS
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1864786591e-171
Genevisible260664_at1e-133
Expression AtlasAT1G19510-
AtGenExpressAT1G19510-
ATTED-IIAT1G19510-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G19510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G19510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190341e-169AK119034.1 Arabidopsis thaliana At1g19510 mRNA for putative myb-related protein, complete cds, clone: RAFL21-36-F10.
GenBankAY5195241e-169AY519524.1 Arabidopsis thaliana MYB transcription factor (At1g19510) mRNA, complete cds.
GenBankBT0056571e-169BT005657.1 Arabidopsis thaliana clone U51233 putative myb family transcription factor (At1g19510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564087.29e-69protein RADIALIS-like 5
SwissprotQ8GW751e-70RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A087HPN22e-61A0A087HPN2_ARAAL; Uncharacterized protein
STRINGAT1G19510.13e-68(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Representative plantOGRP3471298
Publications ? help Back to Top
  1. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  4. Baxter CE,Costa MM,Coen ES
    Diversification and co-option of RAD-like genes in the evolution of floral asymmetry.
    Plant J., 2007. 52(1): p. 105-13
    [PMID:17672842]
  5. Hamaguchi A, et al.
    A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis.
    Biosci. Biotechnol. Biochem., 2008. 72(10): p. 2687-96
    [PMID:18838801]